STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_29770Putative LuxR family transcriptional regulator. (277 aa)    
Predicted Functional Partners:
ROP_35260
Hypothetical protein.
 
  
 0.654
ROP_03590
Putative two-component histidine kinase.
 
 
 0.612
ROP_29730
Hypothetical protein.
 
     0.609
ROP_65300
Putative two-component histidine kinase.
 
 
 0.596
ROP_61200
Putative two-component histidine kinase.
 
 
 0.592
devS
Two-component histidine kinase DevS.
  
 
 0.580
ROP_19680
Two-component histidine kinase.
  
 
 0.580
ROP_29660
Putative protein-tyrosine-phosphatase; Protein synonym:phosphotyrosine phosphatase.
 
     0.570
ROP_29740
Putative fatty-acid--CoA ligase; Protein synonym:acyl-CoA synthetase.
     
 0.549
ROP_25950
Hypothetical protein.
 
   
 0.546
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.