STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_30630Putative CdaR family transcriptional regulator. (410 aa)    
Predicted Functional Partners:
ROP_56700
Putative CdaR family transcriptional regulator.
  
     0.636
ROP_13320
Putative CdaR family transcriptional regulator.
  
     0.620
ROP_63660
Hypothetical protein.
  
     0.559
ROP_13590
Hypothetical protein.
 
     0.520
ROP_57650
Hypothetical protein.
  
    0.504
ROP_32560
Putative CdaR family transcriptional regulator.
  
     0.488
ROP_30640
4-coumarate--CoA ligase.
       0.485
ROP_33800
Putative CdaR family transcriptional regulator.
  
     0.472
ROP_33790
Putative CdaR family transcriptional regulator.
  
     0.458
ROP_04090
Putative serine/threonine protein kinase.
 
     0.440
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.