Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ROP_31270Putative ABC transporter permease protein. (276 aa)    
Predicted Functional Partners:
ROP_31280
Putative ABC transporter ATP-binding protein.
 
 
 0.970
ROP_31290
Hypothetical protein.
 
 
 0.930
ROP_13040
Putative ABC transporter ATP-binding protein.
 
 
 0.908
ROP_50110
Putative ABC transporter ATP-binding protein.
 
 
 0.898
ROP_68350
Putative ABC transporter ATP-binding protein.
 
 
 0.881
ssuB
Putative ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 
 0.814
ROP_13020
Hypothetical protein.
 
 0.751
ROP_50210
Putative ABC transporter substrate-binding protein.
 
 
 0.717
ROP_50100
Hypothetical protein.
 
 
 0.712
ROP_50090
Hypothetical protein.
 
 
 0.694
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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