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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_32030Putative amino acid transporter. (489 aa)    
Predicted Functional Partners:
ROP_32020
Hypothetical protein.
 
  
 0.759
ROP_32040
Putative oxidoreductase.
 
   
 0.705
ROP_56660
Putative amino acid transporter.
  
     0.627
ROP_32050
Hypothetical protein.
       0.601
aglA
Alpha-glucosidase.
  
 0.555
glgE
Putative glucanase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
  
 0.555
aglA-2
Alpha-glucosidase.
  
 0.555
treS
Trehalose synthase; Protein synonym:maltose alpha-D-glucosyltransferase.
  
 0.555
treS-2
Trehalose synthase; Protein synonym:maltose alpha-D-glucosyltransferase.
  
 0.555
ROP_33280
Putative amino acid transporter.
  
   
 0.477
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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