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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_32040Putative oxidoreductase. (436 aa)    
Predicted Functional Partners:
ROP_32050
Hypothetical protein.
       0.784
ROP_01030
Putative flavin-containing amine oxidase; Fragment.
  
     0.744
ROP_32030
Putative amino acid transporter.
 
   
 0.705
ROP_67960
Putative acetoin utilization protein.
  
 0.582
ROP_13480
Putative helicase.
  
 
 0.561
ROP_31480
Putative two-component histidine kinase.
  
  
 0.536
ROP_11740
Putative helicase.
    
 0.500
ROP_12610
Putative helicase.
    
 0.500
ROP_20120
Putative two-component histidine kinase.
  
  
 0.496
ROP_32020
Hypothetical protein.
       0.487
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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