Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ROP_32040Putative oxidoreductase. (436 aa)    
Predicted Functional Partners:
ROP_32050
Hypothetical protein.
       0.774
ROP_01030
Putative flavin-containing amine oxidase; Fragment.
  
     0.744
ROP_32030
Putative amino acid transporter.
 
 
 
 0.724
ROP_67960
Putative acetoin utilization protein.
  
 0.572
ROP_13480
Putative helicase.
  
 
 0.566
ROP_31480
Putative two-component histidine kinase.
  
  
 0.557
ROP_20120
Putative two-component histidine kinase.
  
  
 0.518
ROP_11740
Putative helicase.
    
 0.505
ROP_12610
Putative helicase.
    
 0.505
ROP_51860
Hypothetical protein; Belongs to the UPF0311 family.
 
 
 
 0.485
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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