STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_32390Putative PadR family transcriptional regulator. (185 aa)    
Predicted Functional Partners:
ino1
Myo-inositol-1-phosphate synthase.
 
   
 0.963
ROP_34530
Hypothetical membrane protein.
 
   
 0.640
ROP_32410
Hypothetical protein.
       0.489
ROP_50190
Hypothetical membrane protein.
  
  
 0.480
ROP_63760
Hypothetical protein.
 
     0.463
ROP_32370
Hypothetical protein.
       0.449
ROP_32380
Hypothetical membrane protein.
       0.449
ROP_32350
Hypothetical protein.
       0.425
ROP_49490
Putative LytR family regulatory protein.
   
  
 0.420
ROP_42370
Putative hydrolase.
 
     0.419
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.