STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_33480Iron-containing alcohol dehydrogenase. (423 aa)    
Predicted Functional Partners:
ROP_23310
Putative aldehyde dehydrogenase.
 
 0.952
ROP_33490
MFS transporter.
  
  
 0.810
ROP_42970
Hydroxyquinol 1,2-dioxygenase.
 
  
 0.615
ROP_33470
Putative IclR family transcriptional regulator.
     
 0.500
ROP_18380
NADP-dependent alcohol dehydrogenase.
  
 
 0.487
ROP_18670
Putative alcohol dehydrogenase.
  
 
 0.487
ROP_29450
NADP-dependent alcohol dehydrogenase.
  
 
 0.487
adh
Alcohol dehydrogenase.
  
 
 0.487
ROP_46300
Putative oxidoreductase.
  
 
 0.487
adh-2
Alcohol dehydrogenase.
  
 
 0.487
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.