STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltD-2Glutamate synthase small subunit. (483 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase large subunit.
 0.999
ROP_14700
Putative glutamate synthase.
 0.999
gltB-2
Glutamate synthase large subunit.
 0.999
ROP_59390
Hypothetical protein; Belongs to the glutamate synthase family.
 
 0.950
gdhA
NADP-dependent glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 0.936
ROP_00720
Hypothetical protein; Belongs to the glutamate synthase family.
 
 0.930
carB
Protein synonym:carbamoyl-phosphate synthetase ammonia chain; Belongs to the CarB family.
  
 
 0.926
ROP_29500
Delta-1-pyrroline-5-carboxylate dehydrogenase.
   
 0.919
ROP_60130
Delta-1-pyrroline-5-carboxylate dehydrogenase.
   
 0.919
glsA
Glutaminase; Belongs to the glutaminase family.
  
 
 0.917
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.