Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROP_06440 | ROP_35520 | ROP_06440 | ROP_35520 | Hypothetical membrane protein. | Hypothetical protein. | 0.629 |
ROP_18740 | ROP_35520 | ROP_18740 | ROP_35520 | Putative MerR family transcriptional regulator. | Hypothetical protein. | 0.471 |
ROP_18740 | ROP_49700 | ROP_18740 | ROP_49700 | Putative MerR family transcriptional regulator. | Putative pseudouridine synthase. | 0.411 |
ROP_18740 | dnaA | ROP_18740 | ROP_34830 | Putative MerR family transcriptional regulator. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 0.962 |
ROP_18740 | recF | ROP_18740 | ROP_34860 | Putative MerR family transcriptional regulator. | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.649 |
ROP_35480 | ROP_35490 | ROP_35480 | ROP_35490 | Phosphoglycerate mutase family protein. | Putative hydrolase. | 0.844 |
ROP_35480 | ROP_35500 | ROP_35480 | ROP_35500 | Phosphoglycerate mutase family protein. | Hypothetical membrane protein. | 0.773 |
ROP_35480 | ROP_35520 | ROP_35480 | ROP_35520 | Phosphoglycerate mutase family protein. | Hypothetical protein. | 0.595 |
ROP_35480 | lysX | ROP_35480 | ROP_35510 | Phosphoglycerate mutase family protein. | Putative lysyl-tRNA synthetase; Catalyzes the production of L-lysyl-tRNA(Lys)transfer and the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), one of the components of the bacterial membrane with a positive net charge. LPG synthesis contributes to the resistance to cationic antimicrobial peptides (CAMPs) and likely protects M.tuberculosis against the CAMPs produced by competiting microorganisms (bacteriocins). In fact, the modification of anionic phosphatidylglycerol with positively charged L-l [...] | 0.869 |
ROP_35490 | ROP_35480 | ROP_35490 | ROP_35480 | Putative hydrolase. | Phosphoglycerate mutase family protein. | 0.844 |
ROP_35490 | ROP_35500 | ROP_35490 | ROP_35500 | Putative hydrolase. | Hypothetical membrane protein. | 0.826 |
ROP_35490 | ROP_35520 | ROP_35490 | ROP_35520 | Putative hydrolase. | Hypothetical protein. | 0.631 |
ROP_35490 | lysX | ROP_35490 | ROP_35510 | Putative hydrolase. | Putative lysyl-tRNA synthetase; Catalyzes the production of L-lysyl-tRNA(Lys)transfer and the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), one of the components of the bacterial membrane with a positive net charge. LPG synthesis contributes to the resistance to cationic antimicrobial peptides (CAMPs) and likely protects M.tuberculosis against the CAMPs produced by competiting microorganisms (bacteriocins). In fact, the modification of anionic phosphatidylglycerol with positively charged L-l [...] | 0.918 |
ROP_35500 | ROP_35480 | ROP_35500 | ROP_35480 | Hypothetical membrane protein. | Phosphoglycerate mutase family protein. | 0.773 |
ROP_35500 | ROP_35490 | ROP_35500 | ROP_35490 | Hypothetical membrane protein. | Putative hydrolase. | 0.826 |
ROP_35500 | ROP_35520 | ROP_35500 | ROP_35520 | Hypothetical membrane protein. | Hypothetical protein. | 0.559 |
ROP_35500 | lysX | ROP_35500 | ROP_35510 | Hypothetical membrane protein. | Putative lysyl-tRNA synthetase; Catalyzes the production of L-lysyl-tRNA(Lys)transfer and the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), one of the components of the bacterial membrane with a positive net charge. LPG synthesis contributes to the resistance to cationic antimicrobial peptides (CAMPs) and likely protects M.tuberculosis against the CAMPs produced by competiting microorganisms (bacteriocins). In fact, the modification of anionic phosphatidylglycerol with positively charged L-l [...] | 0.889 |
ROP_35520 | ROP_06440 | ROP_35520 | ROP_06440 | Hypothetical protein. | Hypothetical membrane protein. | 0.629 |
ROP_35520 | ROP_18740 | ROP_35520 | ROP_18740 | Hypothetical protein. | Putative MerR family transcriptional regulator. | 0.471 |
ROP_35520 | ROP_35480 | ROP_35520 | ROP_35480 | Hypothetical protein. | Phosphoglycerate mutase family protein. | 0.595 |
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