STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_35680Putative MFS transporter. (444 aa)    
Predicted Functional Partners:
ROP_35670
Putative long-chain fatty-acid--CoA ligase; Protein synonym:acyl-CoA synthetase.
       0.635
ROP_35660
Putative MerR family transcriptional regulator.
  
  
 0.566
ROP_35650
Hypothetical membrane protein.
       0.477
ROP_46090
Putative MFS transporter.
 
  
0.440
ROP_52070
Hypothetical protein.
 
     0.435
ROP_03090
Putative ABC transporter substrate-binding protein.
  
  
 0.427
ROP_37290
Putative ABC transporter substrate-binding protein.
  
  
 0.427
ROP_48590
Hypothetical protein.
  
  
 0.427
ROP_66360
Putative ABC transporter substrate-binding protein.
  
  
 0.427
ROP_69080
Hypothetical protein.
 
  
 0.419
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.