Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ROP_36070Hypothetical protein. (379 aa)    
Predicted Functional Partners:
ROP_57970
Hypothetical protein.
  
 
 0.984
ROP_54850
Putative glycosyltransferase.
  
  
 0.955
ROP_54780
Putative glycosyltransferase.
  
  
 0.846
ROP_55060
Putative glycosyltransferase.
  
  
 0.846
ROP_39770
Putative ABC transporter ATP-binding protein.
  
  
 0.773
ROP_39780
Putative ABC transporter permease protein.
  
  
 0.769
ROP_55230
Putative protein-tyrosine kinase.
  
 
 0.605
ROP_55120
Putative acyltransferase.
  
  
 0.546
ROP_60410
Putative Mrp family protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.539
ROP_05300
Hypothetical protein.
  
  
 0.537
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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