Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ROP_36620Hypothetical protein. (413 aa)    
Predicted Functional Partners:
ROP_35610
Putative IclR family transcriptional regulator.
  
     0.604
ROP_36630
Hypothetical protein.
       0.576
ROP_46540
Hypothetical protein.
  
     0.562
ROP_36610
Hypothetical protein.
       0.558
ROP_18010
Hypothetical protein.
 
     0.557
ROP_25350
Hypothetical protein.
  
     0.553
ROP_25280
Putative TetR family transcriptional regulator.
  
     0.542
ispD
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).
   
    0.516
ROP_14480
Hypothetical protein.
  
     0.465
ROP_17750
Putative TetR family transcriptional regulator.
  
     0.424
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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