Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ROP_36660Putative arylsulfatase. (795 aa)    
Predicted Functional Partners:
ROP_42100
Hypothetical protein.
 
   0.835
ROP_44850
Hypothetical protein.
 
   0.835
ROP_44840
Putative acid phosphatase.
 
     0.779
ROP_47630
Putative acid phosphatase.
 
     0.778
ROP_23580
Hypothetical protein.
 
     0.737
ROP_42020
Hypothetical protein.
 
     0.701
ROP_36640
Hypothetical protein.
     
 0.591
ROP_36650
Hypothetical protein.
       0.565
ROP_36670
Putative serine/threonine protein kinase.
       0.493
ROP_42080
Hypothetical membrane protein.
 
     0.483
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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