Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ROP_36780Hypothetical membrane protein. (125 aa)    
Predicted Functional Partners:
ROP_36770
Hypothetical protein.
       0.538
ROP_66230
Putative M50B family peptidase.
  
    0.414
ROP_06710
Putative hydrolase.
   
    0.413
ROP_18650
Putative hydrolase.
   
    0.413
nagD
Putative NMP phosphatase; Belongs to the HAD-like hydrolase superfamily.
   
    0.413
pstP
Protein synonym:phosphoprotein phosphatase.
  
    0.410
rpmJ
Putative 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
    0.401
rpmJ-2
50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
    0.401
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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