STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_38470Hypothetical protein. (168 aa)    
Predicted Functional Partners:
ROP_38450
Extradiol dioxygenase.
 
    0.952
ROP_38490
Putative oxidoreductase.
 
  
 0.935
ROP_38500
Putative acetolactate synthase large subunit; Belongs to the TPP enzyme family.
 
     0.925
ROP_38480
Putative oxidoreductase.
 
  
 0.871
ROP_38510
Putative oxidoreductase.
 
  
 0.847
ROP_38460
Putative hydrolase.
 
  
 0.838
ROP_38640
Putative iron-sulfur protein; Protein synonym:Rieske [2Fe-2S] family protein.
 
   
 0.803
ROP_38440
Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.785
ROP_38520
Hypothetical protein.
       0.725
ROP_53500
Extradiol dioxygenase.
 
    0.643
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.