STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_38680Putative uracil-DNA glycosylase. (223 aa)    
Predicted Functional Partners:
ROP_60020
Putative uracil-DNA glycosylase.
  
  
  0.918
ROP_38690
Putative oxidoreductase.
  
    0.606
ROP_38670
Hypothetical protein.
       0.565
ROP_62430
Peptidase M22 family protein.
  
    0.538
ROP_29690
Putative carboxyltransferase.
  
    0.482
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
    0.474
ROP_21620
Hypothetical protein.
 
     0.460
moeB
Putative molybdopterin synthase sulfurylase MoeB; Protein synonym:molybdenum cofactor biosynthesis protein.
  
  
 0.446
dnaX
DNA polymerase III gamma/tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
  
 0.430
holB
DNA polymerase III delta' subunit.
  
  
 0.430
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.