Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROP_04100 | ROP_25630 | ROP_04100 | ROP_25630 | Hypothetical protein. | Putative two-component histidine kinase. | 0.911 |
ROP_04100 | ROP_38810 | ROP_04100 | ROP_38810 | Hypothetical protein. | Putative two-component histidine kinase. | 0.869 |
ROP_04100 | ROP_38820 | ROP_04100 | ROP_38820 | Hypothetical protein. | Putative two-component system thioredoxin reductase. | 0.969 |
ROP_04100 | ROP_58150 | ROP_04100 | ROP_58150 | Hypothetical protein. | Hypothetical protein. | 0.993 |
ROP_04100 | ROP_68950 | ROP_04100 | ROP_68950 | Hypothetical protein. | Putative LuxR family transcriptional regulator. | 0.955 |
ROP_04100 | cya | ROP_04100 | ROP_11720 | Hypothetical protein. | Protein synonym:adenylyl cyclase. | 0.770 |
ROP_25630 | ROP_04100 | ROP_25630 | ROP_04100 | Putative two-component histidine kinase. | Hypothetical protein. | 0.911 |
ROP_25630 | ROP_38810 | ROP_25630 | ROP_38810 | Putative two-component histidine kinase. | Putative two-component histidine kinase. | 0.898 |
ROP_25630 | ROP_38820 | ROP_25630 | ROP_38820 | Putative two-component histidine kinase. | Putative two-component system thioredoxin reductase. | 0.985 |
ROP_25630 | ROP_58150 | ROP_25630 | ROP_58150 | Putative two-component histidine kinase. | Hypothetical protein. | 0.931 |
ROP_25630 | ROP_68950 | ROP_25630 | ROP_68950 | Putative two-component histidine kinase. | Putative LuxR family transcriptional regulator. | 0.951 |
ROP_25630 | cya | ROP_25630 | ROP_11720 | Putative two-component histidine kinase. | Protein synonym:adenylyl cyclase. | 0.617 |
ROP_28430 | ROP_38810 | ROP_28430 | ROP_38810 | Hypothetical protein. | Putative two-component histidine kinase. | 0.878 |
ROP_28430 | acoA | ROP_28430 | ROP_24840 | Hypothetical protein. | Putative acetoin dehydrogenase E1 component alpha subunit. | 0.998 |
ROP_28430 | acoB | ROP_28430 | ROP_24830 | Hypothetical protein. | Putative acetoin dehydrogenase E1 component beta subunit. | 0.998 |
ROP_38800 | ROP_38810 | ROP_38800 | ROP_38810 | Hypothetical protein. | Putative two-component histidine kinase. | 0.953 |
ROP_38800 | ROP_38820 | ROP_38800 | ROP_38820 | Hypothetical protein. | Putative two-component system thioredoxin reductase. | 0.968 |
ROP_38810 | ROP_04100 | ROP_38810 | ROP_04100 | Putative two-component histidine kinase. | Hypothetical protein. | 0.869 |
ROP_38810 | ROP_25630 | ROP_38810 | ROP_25630 | Putative two-component histidine kinase. | Putative two-component histidine kinase. | 0.898 |
ROP_38810 | ROP_28430 | ROP_38810 | ROP_28430 | Putative two-component histidine kinase. | Hypothetical protein. | 0.878 |
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