STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_39070Putative LytR family regulatory protein. (406 aa)    
Predicted Functional Partners:
cobB-2
NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
    0.792
ROP_69830
Putative SufR family transcriptional regulator.
  
    0.767
ROP_49490
Putative LytR family regulatory protein.
 
   
0.764
kdpE
Turgor pressure transcriptional regulator KdpE; Protein synonym:kdp operon response regulator.
  
  
 0.753
ROP_15930
Hypothetical protein.
  
    0.747
ftn-2
Putative ferritin; Iron-storage protein.
       0.739
ROP_01020
Putative CdaR family transcriptional regulator.
   
    0.732
ROP_33960
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
  
 0.727
ROP_33370
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
  
 0.721
ROP_62900
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
  
 0.721
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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