STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_39360Mycolyltransferase. (336 aa)    
Predicted Functional Partners:
ROP_51530
Hypothetical protein.
    
  0.900
ROP_55070
Putative glycosyltransferase.
    
  0.900
ROP_39400
Hypothetical protein.
 
   
 0.865
aftB
Arabinosyltransferase AftB.
 
     0.818
ROP_64340
Putative lipase.
 
 
 0.814
ROP_15770
Putative lipase.
 
 
 0.755
aftC
Arabinosyltransferase AftC.
  
     0.749
ROP_02250
Hypothetical protein.
 
   
 0.739
ROP_35370
Hypothetical protein.
  
     0.737
ROP_59850
Hypothetical protein.
  
   
 0.737
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.