STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_39830Putative integrase; Belongs to the 'phage' integrase family. (368 aa)    
Predicted Functional Partners:
ROP_22200
Hypothetical protein.
 
   
 0.549
ROP_16380
Hypothetical protein.
 
  
 0.485
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
   
  
 0.474
ROP_63880
Hypothetical protein.
  
    0.472
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
    0.466
ROP_64000
Hypothetical protein; Belongs to the SOS response-associated peptidase family.
  
  
 0.460
whiA
WhiA-like protein; Involved in cell division and chromosome segregation.
  
  
 0.442
ROP_39940
Hypothetical protein.
  
  
 0.411
ROP_54830
Hypothetical membrane protein.
  
     0.402
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.