STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_41530Hypothetical protein; Belongs to the pirin family. (321 aa)    
Predicted Functional Partners:
ssuD
Alkanesulfonate monooxygenase.
  
  
 0.695
ROP_20230
Putative dioxygenase.
     
 0.654
ROP_37710
Hypothetical protein; Belongs to the pirin family.
 
     0.645
ROP_53870
Putative catechol 2,3-dioxygenase.
  
  
 0.578
ROP_37340
Putative catechol 2,3-dioxygenase.
  
  
 0.563
ROP_54070
Putative catechol 2,3-dioxygenase.
  
  
 0.563
ROP_37670
Hypothetical protein; Belongs to the UPF0312 family.
 
   
 0.557
pcaG
Protocatechuate 3,4-dioxygenase alpha subunit.
     
 0.550
pobA
P-hydroxybenzoate hydroxylase; Protein synonym:4-hydroxybenzoate 3-monooxygenase.
     
 0.548
pcaH
Protocatechuate 3,4-dioxygenase beta subunit.
     
 0.547
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.