STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_43340Putative cysteine dioxygenase. (177 aa)    
Predicted Functional Partners:
ROP_43350
Hypothetical protein.
     0.945
lysS
lysyl-tRNA synthetase; Protein synonym:LysRS; protein synonym:lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.674
ROP_49820
Hypothetical membrane protein.
 
   
 0.668
sodA
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.606
ROP_65090
Hypothetical protein.
 
  
 0.591
ROP_17570
Hypothetical protein.
 
   
 0.590
ROP_22610
Putative TetR family transcriptional regulator.
 
   
 0.590
ROP_63820
Putative TetR family transcriptional regulator.
 
   
 0.567
pks13
Protein synonym:type I polyketide synthase.
 
 
 0.529
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
       0.528
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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