Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ROP_43500Hypothetical membrane protein. (264 aa)    
Predicted Functional Partners:
ROP_43510
Hypothetical membrane protein.
 
     0.953
ROP_43470
Hypothetical membrane protein.
 
     0.803
cobIJ
Precorrin-2 C(20)-methyltransferase/precorrin-3B C(17)-methyltransferase; Bifunctional protein; protein synonym:cobalamin biosynthesis protein CobIJ; Belongs to the precorrin methyltransferase family.
 
     0.606
cobL
Protein synonym:precorrin-6Y methylase.
 
     0.593
cobF
precorrin-6A synthase.
 
     0.538
ROP_13830
Hypothetical protein.
  
     0.521
ROP_43520
Hypothetical protein.
       0.485
ROP_51270
Putative TetR family transcriptional regulator.
  
     0.469
cobK
Protein synonym:precorrin-6A reductase.
 
     0.446
ROP_56820
Hypothetical protein.
  
    0.434
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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