STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_44570Putative oxidoreductase. (195 aa)    
Predicted Functional Partners:
ROP_44560
Extradiol dioxygenase.
  
 
 0.976
ROP_44550
Meta-cleavage compound hydrolase.
  
  
 0.913
ROP_44540
Putative hydroxylase.
 
  
 0.844
ROP_58640
Extradiol dioxygenase.
  
 
 0.767
hpaC
Putative 4-hydroxyphenylacetate 3-hydroxylase reductase component.
  
     0.744
ssuD
Alkanesulfonate monooxygenase.
  
 
 0.710
ROP_22150
Extradiol dioxygenase.
    
  0.666
ROP_44520
Hypothetical protein.
       0.606
kshA-2
3-ketosteroid 9alpha-hydroxylase component KshA; Protein synonym:terminal oxygenase.
     
 0.605
ROP_64780
Oxidoreductase.
  
 
 0.605
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.