STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_44900Putative decarboxylase. (247 aa)    
Predicted Functional Partners:
maiA
Maleate cis-trans isomerase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.
  
  
 
0.925
ROP_07760
Putative succinate dehydrogenase flavoprotein subunit.
  
 
  0.908
sdhA
Succinate dehydrogenase flavoprotein subunit.
  
 
  0.908
sdhB
Succinate dehydrogenase iron-sulfur protein.
    
  0.903
ROP_07750
Putative succinate dehydrogenase iron-sulfur protein.
    
  0.903
sdhB-2
Succinate dehydrogenase iron-sulfur protein.
    
  0.903
ROP_24960
Putative oxidoreductase.
     
  0.900
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein.
     
  0.900
sdhC
Succinate dehydrogenase cytochrome b subunit.
     
  0.900
ROP_44890
Putative oxidoreductase.
 
     0.884
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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