Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROP_17180 | ROP_24000 | ROP_17180 | ROP_24000 | Putative acyl-CoA oxidase. | Putative oxidoreductase. | 0.919 |
ROP_17180 | ROP_44970 | ROP_17180 | ROP_44970 | Putative acyl-CoA oxidase. | enoyl-CoA hydratase/isomerase family protein. | 0.954 |
ROP_17180 | ROP_45750 | ROP_17180 | ROP_45750 | Putative acyl-CoA oxidase. | Hypothetical protein. | 0.434 |
ROP_17180 | gcdH | ROP_17180 | ROP_20160 | Putative acyl-CoA oxidase. | Putative glutaryl-CoA dehydrogenase. | 0.900 |
ROP_17180 | gcdH-2 | ROP_17180 | ROP_23800 | Putative acyl-CoA oxidase. | Putative glutaryl-CoA dehydrogenase. | 0.900 |
ROP_24000 | ROP_17180 | ROP_24000 | ROP_17180 | Putative oxidoreductase. | Putative acyl-CoA oxidase. | 0.919 |
ROP_24000 | ROP_44970 | ROP_24000 | ROP_44970 | Putative oxidoreductase. | enoyl-CoA hydratase/isomerase family protein. | 0.923 |
ROP_36710 | ROP_44970 | ROP_36710 | ROP_44970 | Hypothetical protein. | enoyl-CoA hydratase/isomerase family protein. | 0.921 |
ROP_36710 | gcdH | ROP_36710 | ROP_20160 | Hypothetical protein. | Putative glutaryl-CoA dehydrogenase. | 0.909 |
ROP_36710 | gcdH-2 | ROP_36710 | ROP_23800 | Hypothetical protein. | Putative glutaryl-CoA dehydrogenase. | 0.909 |
ROP_44970 | ROP_17180 | ROP_44970 | ROP_17180 | enoyl-CoA hydratase/isomerase family protein. | Putative acyl-CoA oxidase. | 0.954 |
ROP_44970 | ROP_24000 | ROP_44970 | ROP_24000 | enoyl-CoA hydratase/isomerase family protein. | Putative oxidoreductase. | 0.923 |
ROP_44970 | ROP_36710 | ROP_44970 | ROP_36710 | enoyl-CoA hydratase/isomerase family protein. | Hypothetical protein. | 0.921 |
ROP_44970 | ROP_45750 | ROP_44970 | ROP_45750 | enoyl-CoA hydratase/isomerase family protein. | Hypothetical protein. | 0.941 |
ROP_44970 | ROP_61670 | ROP_44970 | ROP_61670 | enoyl-CoA hydratase/isomerase family protein. | Putative acyl-CoA dehydrogenase. | 0.954 |
ROP_44970 | accD-5 | ROP_44970 | ROP_61520 | enoyl-CoA hydratase/isomerase family protein. | acyl-CoA carboxylase beta chain; Protein synonym:carboxyltransferase. | 0.933 |
ROP_44970 | fadE-25 | ROP_44970 | ROP_44980 | enoyl-CoA hydratase/isomerase family protein. | acyl-CoA dehydrogenase. | 0.945 |
ROP_44970 | fadE-33 | ROP_44970 | ROP_61540 | enoyl-CoA hydratase/isomerase family protein. | acyl-CoA dehydrogenase. | 0.954 |
ROP_44970 | gcdH | ROP_44970 | ROP_20160 | enoyl-CoA hydratase/isomerase family protein. | Putative glutaryl-CoA dehydrogenase. | 0.917 |
ROP_44970 | gcdH-2 | ROP_44970 | ROP_23800 | enoyl-CoA hydratase/isomerase family protein. | Putative glutaryl-CoA dehydrogenase. | 0.915 |
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