STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadE-25acyl-CoA dehydrogenase. (384 aa)    
Predicted Functional Partners:
ROP_44970
enoyl-CoA hydratase/isomerase family protein.
 
 0.945
echA-3
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.914
ROP_12430
enoyl-CoA hydratase/isomerase family protein.
 
 0.768
ROP_72050
Hypothetical protein.
 
 0.734
etfA
Electron transfer flavoprotein alpha subunit.
 
 0.719
mmsB-2
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
 
  
 0.714
mmsB
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
 
  
 0.707
fadB-3
Fatty oxidation complex alpha subunit; Multifunctional protein.
  
 0.682
etfB
Electron transfer flavoprotein beta subunit.
 
 
 0.677
fadB
Fatty oxidation complex alpha subunit; Multifunctional protein.
  
 0.665
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.