STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_45200Putative aromatic acid transporter. (457 aa)    
Predicted Functional Partners:
ROP_45210
Putative acid--CoA ligase.
       0.777
benB
Benzoate 1,2-dioxygenase small subunit.
 
  
 0.669
ROP_45230
Hypothetical protein.
       0.604
ROP_45220
Hypothetical protein.
       0.601
benA
Benzoate 1,2-dioxygenase large subunit.
 
  
 0.533
ROP_71720
Putative aromatic hydrocarbon dioxygenase small subunit.
 
  
 0.512
ROP_25680
Putative aromatic hydrocarbon dioxygenase small subunit.
  
  
 0.427
benD
2-hydro-1,2-dihydroxybenzoate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.404
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.