STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_45680Ferredoxin reductase. (409 aa)    
Predicted Functional Partners:
ROP_45690
Cytochrome P450.
 
  
 0.880
ROP_34600
Putative nitrate/sulfite reductase; Bifunctional protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.772
ROP_45700
2Fe-2S ferredoxin.
 
  
 0.762
nirD
Nitrite reductase small subunit.
 
 
 0.675
ROP_70810
2Fe-2S ferredoxin.
 
 
 0.660
ROP_14890
2Fe-2S ferredoxin.
 
 
 0.648
ROP_53630
Putative iron-sulfur protein; Protein synonym:Rieske [2Fe-2S] family protein.
 
 
 0.640
ROP_42810
2Fe-2S ferredoxin.
 
 
 0.636
ROP_45510
Hypothetical protein.
  
 
 0.633
rubA
Rubredoxin; Belongs to the rubredoxin family.
  
 
 0.625
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.