Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROP_17880 | ROP_45800 | ROP_17880 | ROP_45800 | Hypothetical protein. | Putative acyl-CoA dehydrogenase. | 0.419 |
ROP_17880 | ROP_45830 | ROP_17880 | ROP_45830 | Hypothetical protein. | Putative acetyl-CoA acyltransferase; Protein synonym:acyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.671 |
ROP_17880 | ROP_45910 | ROP_17880 | ROP_45910 | Hypothetical protein. | Putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.641 |
ROP_17880 | ROP_45920 | ROP_17880 | ROP_45920 | Hypothetical protein. | Putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.625 |
ROP_17880 | ROP_45950 | ROP_17880 | ROP_45950 | Hypothetical protein. | Putative fatty-acid--CoA ligase; Fragment. | 0.501 |
ROP_17880 | echA-4 | ROP_17880 | ROP_45880 | Hypothetical protein. | enoyl-CoA hydratase. | 0.637 |
ROP_17880 | fadE-26 | ROP_17880 | ROP_45810 | Hypothetical protein. | acyl-CoA dehydrogenase. | 0.845 |
ROP_17880 | fas1 | ROP_17880 | ROP_11350 | Hypothetical protein. | Fatty-acid synthase I. | 0.516 |
ROP_17880 | pcaF | ROP_17880 | ROP_10560 | Hypothetical protein. | Putative beta-ketoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.625 |
ROP_45800 | ROP_17880 | ROP_45800 | ROP_17880 | Putative acyl-CoA dehydrogenase. | Hypothetical protein. | 0.419 |
ROP_45800 | ROP_45830 | ROP_45800 | ROP_45830 | Putative acyl-CoA dehydrogenase. | Putative acetyl-CoA acyltransferase; Protein synonym:acyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.758 |
ROP_45800 | ROP_45910 | ROP_45800 | ROP_45910 | Putative acyl-CoA dehydrogenase. | Putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.638 |
ROP_45800 | ROP_45920 | ROP_45800 | ROP_45920 | Putative acyl-CoA dehydrogenase. | Putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.631 |
ROP_45800 | ROP_45950 | ROP_45800 | ROP_45950 | Putative acyl-CoA dehydrogenase. | Putative fatty-acid--CoA ligase; Fragment. | 0.594 |
ROP_45800 | echA-4 | ROP_45800 | ROP_45880 | Putative acyl-CoA dehydrogenase. | enoyl-CoA hydratase. | 0.654 |
ROP_45800 | fadE-26 | ROP_45800 | ROP_45810 | Putative acyl-CoA dehydrogenase. | acyl-CoA dehydrogenase. | 0.669 |
ROP_45800 | fas1 | ROP_45800 | ROP_11350 | Putative acyl-CoA dehydrogenase. | Fatty-acid synthase I. | 0.496 |
ROP_45800 | pcaF | ROP_45800 | ROP_10560 | Putative acyl-CoA dehydrogenase. | Putative beta-ketoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.441 |
ROP_45830 | ROP_17880 | ROP_45830 | ROP_17880 | Putative acetyl-CoA acyltransferase; Protein synonym:acyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | Hypothetical protein. | 0.671 |
ROP_45830 | ROP_45800 | ROP_45830 | ROP_45800 | Putative acetyl-CoA acyltransferase; Protein synonym:acyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. | Putative acyl-CoA dehydrogenase. | 0.758 |
page 1 of 6