STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_46200Fumarylacetoacetate hydrolase family protein. (296 aa)    
Predicted Functional Partners:
ROP_46190
Putative phenol monooxygenase; Protein synonym:phenol hydroxylase.
  
  
 0.811
ROP_40700
Fumarylacetoacetate hydrolase family protein.
 
     0.784
acsA-2
acetoacetyl-CoA synthetase; Protein synonym:acetoacetate--CoA ligase.
  
  
 0.643
ROP_46210
Extradiol dioxygenase.
     
 0.643
ROP_46150
Putative oxidoreductase.
  
 
 0.547
ROP_20230
Putative dioxygenase.
  
  
 0.524
ROP_46160
Putative CdaR family transcriptional regulator.
       0.444
paaN
Phenylacetic acid degradation protein PaaN.
  
 
 0.430
ligD
ATP-dependent DNA ligase LigD.
  
  
 0.430
ROP_46170
Putative oxidoreductase.
       0.429
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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