STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_46650Hypothetical protein. (140 aa)    
Predicted Functional Partners:
fadE-27
acyl-CoA dehydrogenase.
  
 0.841
ROP_46640
Hypothetical protein.
       0.828
ROP_46540
Hypothetical protein.
 
 
 0.696
ROP_46620
Putative Fis family transcriptional regulator.
 
     0.660
ROP_17860
Hypothetical protein.
 
   0.652
ROP_53820
Hypothetical protein.
 
     0.636
ROP_26040
Hypothetical protein; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
  
 0.614
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.614
katA
Catalase; Belongs to the catalase family.
  
 0.614
katA-2
Catalase; Belongs to the catalase family.
  
 0.614
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.