STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
ROP_47010Putative oxidoreductase; Belongs to the globin family. (386 aa)    
Predicted Functional Partners:
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 
 0.844
ROP_33020
Putative 3,4-dihydroxy-2-butanone 4-phosphate synthase.
  
  
 0.779
ROP_47000
Putative carboxylesterase.
  
   0.730
carB
Protein synonym:carbamoyl-phosphate synthetase ammonia chain; Belongs to the CarB family.
  
 
 0.711
carA
Protein synonym:carbamoyl-phosphate synthetase glutamine chain; Belongs to the CarA family.
  
  
 0.678
pyrB
Protein synonym:aspartate transcarbamylase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
  
 0.675
pyrF
Orotidine 5'-phosphate decarboxylase; Protein synonym:OMP decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
  
  
 0.667
ROP_55900
Hypothetical protein.
 
  
 0.662
ROP_50930
Hypothetical protein.
 
  
 0.589
ROP_34600
Putative nitrate/sulfite reductase; Bifunctional protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.585
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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