STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmhAPhosphoheptose isomerase; Protein synonym:sedoheptulose 7-phosphate isomerase. (238 aa)    
Predicted Functional Partners:
ROP_47190
Hypothetical protein.
 
     0.953
hypE
Hydrogenase maturation protein HypE.
 
   
 0.928
hypF
Hydrogenase maturation protein HypF.
 
   
 0.893
hypC
Hydrogenase maturation protein HypC.
 
   
 0.849
hypD
Hydrogenase maturation protein HypD.
 
   
 0.777
ROP_45550
Hydrogenase maturation protease.
 
   
 0.750
ROP_45560
Hydrogenase maturation protein.
 
   
 0.750
ROP_47140
Hypothetical protein.
       0.684
ROP_39640
Putative acetyltransferase.
 
 
 
 0.607
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
   
 
 0.584
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.