STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_47420Putative GntR family transcriptional regulator. (253 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.760
ROP_15930
Hypothetical protein.
   
  
 0.714
hutI
Imidazolonepropionase; Protein synonym:imidazolone-5-propionate hydrolase.
 
  
 0.687
hutG
Formiminoglutamate hydrolase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.
 
  
 0.573
ROP_23130
Putative histidine ammonia-lyase; Protein synonym:histidase.
 
  
 0.565
ROP_68310
Putative GntR family transcriptional regulator.
  
     0.557
ROP_33960
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
  
 0.553
ROP_71970
Hypothetical protein.
 
  
 0.533
gdh-2
NAD-dependent glutamate dehydrogenase.
     
 0.524
nagA
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.521
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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