Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ROP_48880Putative ABC transporter substrate-binding protein. (345 aa)    
Predicted Functional Partners:
ROP_70350
Putative iron-siderophore ABC transporter ATP-binding protein.
 
 0.933
ROP_70370
Putative iron-siderophore ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.931
ROP_70360
Putative iron-siderophore ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.893
ROP_48900
Hypothetical protein.
 
  
 0.811
ROP_48870
Non-ribosomal peptide synthetase.
 
  
 0.691
ROP_48910
Putative siderophore export protein.
 
   
 0.683
ROP_48850
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase.
 
 
 
 0.680
ROP_45140
Putative ABC transporter ATP-binding protein.
 
 
 0.669
ROP_48890
Putative non-ribosomal peptide synthetase.
 
  
 0.668
ROP_30420
Putative ABC transporter ATP-binding protein.
 
 
 0.660
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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