Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROP_25070 | ROP_50560 | ROP_25070 | ROP_50560 | Fructokinase. | Putative MFS transporter. | 0.619 |
ROP_25070 | ROP_50570 | ROP_25070 | ROP_50570 | Fructokinase. | Putative aldose 1-epimerase; Protein synonym:mutarotase. | 0.546 |
ROP_25070 | pdxH | ROP_25070 | ROP_50550 | Fructokinase. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.630 |
ROP_25070 | ribH | ROP_25070 | ROP_69520 | Fructokinase. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.446 |
ROP_25070 | ribH2 | ROP_25070 | ROP_13280 | Fructokinase. | Putative 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.446 |
ROP_50540 | ROP_50560 | ROP_50540 | ROP_50560 | Citrate synthase family protein; Belongs to the citrate synthase family. | Putative MFS transporter. | 0.717 |
ROP_50540 | ROP_50570 | ROP_50540 | ROP_50570 | Citrate synthase family protein; Belongs to the citrate synthase family. | Putative aldose 1-epimerase; Protein synonym:mutarotase. | 0.751 |
ROP_50540 | pdxH | ROP_50540 | ROP_50550 | Citrate synthase family protein; Belongs to the citrate synthase family. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.797 |
ROP_50540 | serC | ROP_50540 | ROP_50530 | Citrate synthase family protein; Belongs to the citrate synthase family. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.901 |
ROP_50560 | ROP_25070 | ROP_50560 | ROP_25070 | Putative MFS transporter. | Fructokinase. | 0.619 |
ROP_50560 | ROP_50540 | ROP_50560 | ROP_50540 | Putative MFS transporter. | Citrate synthase family protein; Belongs to the citrate synthase family. | 0.717 |
ROP_50560 | ROP_50570 | ROP_50560 | ROP_50570 | Putative MFS transporter. | Putative aldose 1-epimerase; Protein synonym:mutarotase. | 0.856 |
ROP_50560 | pdxH | ROP_50560 | ROP_50550 | Putative MFS transporter. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.858 |
ROP_50570 | ROP_25070 | ROP_50570 | ROP_25070 | Putative aldose 1-epimerase; Protein synonym:mutarotase. | Fructokinase. | 0.546 |
ROP_50570 | ROP_50540 | ROP_50570 | ROP_50540 | Putative aldose 1-epimerase; Protein synonym:mutarotase. | Citrate synthase family protein; Belongs to the citrate synthase family. | 0.751 |
ROP_50570 | ROP_50560 | ROP_50570 | ROP_50560 | Putative aldose 1-epimerase; Protein synonym:mutarotase. | Putative MFS transporter. | 0.856 |
ROP_50570 | pdxH | ROP_50570 | ROP_50550 | Putative aldose 1-epimerase; Protein synonym:mutarotase. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.828 |
ROP_50570 | serC | ROP_50570 | ROP_50530 | Putative aldose 1-epimerase; Protein synonym:mutarotase. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.465 |
ROP_57490 | pdx1 | ROP_57490 | ROP_68630 | Putative pyridoxamine 5'-phosphate oxidase. | Pyridoxal phosphate synthase component Pdx1; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.920 |
ROP_57490 | pdx2 | ROP_57490 | ROP_68670 | Putative pyridoxamine 5'-phosphate oxidase. | Pyridoxal phosphate synthase component Pdx2; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | 0.920 |
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