STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_56750Putative AEC family transporter. (309 aa)    
Predicted Functional Partners:
ROP_56740
Hypothetical protein.
       0.887
ROP_56730
Hypothetical membrane protein.
  
  
 0.826
ROP_22960
Malate dehydrogenase; Protein synonym:malic enzyme.
  
  
 0.702
ROP_33750
Malate dehydrogenase; Protein synonym:malic enzyme.
  
  
 0.702
ROP_60600
Malate dehydrogenase; Protein synonym:malic enzyme.
  
  
 0.702
rpsR-2
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.649
rpmG-2
50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
 
 0.596
ROP_56760
Putative S12 family peptidase.
     
 0.574
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.536
ROP_56140
Hypothetical membrane protein.
 
     0.480
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.