STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_58500Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (277 aa)    
Predicted Functional Partners:
ROP_58510
Oxidoreductase.
 
    
0.792
ROP_58520
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    
0.777
ROP_49670
Putative oxidoreductase.
  
     0.769
ROP_24590
Putative enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydratase; Bifunctional protein.
 
 0.762
ROP_28970
Putative oxidoreductase.
  
     0.758
ROP_46740
Putative oxidoreductase.
  
     0.746
ROP_58790
Putative enoyl-CoA hydratase.
 
 0.729
fas1
Fatty-acid synthase I.
  
 0.728
ROP_44460
Putative enoyl-CoA hydratase.
 
 0.725
ROP_13460
Putative oxidoreductase.
  
     0.717
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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