STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_59400Hypothetical membrane protein. (135 aa)    
Predicted Functional Partners:
ROP_37430
Hypothetical protein.
  
 
 0.931
ychF
Putative GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.850
ROP_38410
Hypothetical membrane protein.
  
 
 0.785
ROP_59390
Hypothetical protein; Belongs to the glutamate synthase family.
       0.576
ROP_22710
Hypothetical protein.
  
 
 0.480
ROP_22730
Hypothetical protein.
  
 
 0.480
ROP_38420
Putative ABC transporter ATP-binding protein.
  
 
 0.480
ROP_61070
Putative ABC transporter ATP-binding protein.
  
 
 0.480
ROP_68960
Putative ABC transporter ATP-binding protein.
  
  
 0.479
ROP_19250
Putative non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.469
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.