STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_60700Hypothetical membrane protein. (194 aa)    
Predicted Functional Partners:
ROP_60690
Putative TetR family transcriptional regulator.
       0.613
ROP_18730
Hypothetical protein.
  
     0.465
ROP_60670
Putative alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.453
ROP_60660
Putative esterase.
       0.451
ROP_60680
Flavin-containing monooxygenase.
       0.451
ROP_07290
Hypothetical protein.
  
     0.442
ROP_02840
Hypothetical membrane protein.
  
     0.407
ROP_21630
Hypothetical protein.
  
     0.403
ROP_00060
Putative MFS transporter.
  
     0.402
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.