STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_61680Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (510 aa)    
Predicted Functional Partners:
ROP_61690
Hypothetical protein.
       0.763
ROP_61670
Putative acyl-CoA dehydrogenase.
  
  
 0.629
prpC
2-methylcitrate synthase; Belongs to the citrate synthase family.
  
 
 0.492
ROP_50540
Citrate synthase family protein; Belongs to the citrate synthase family.
  
 
 0.492
gltA
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.492
ROP_61660
Putative GntR family transcriptional regulator.
     
 0.482
ROP_06720
Hypothetical protein.
  
 0.457
ROP_12280
Hypothetical protein.
  
 0.457
ROP_13780
Hypothetical protein.
  
 0.457
ROP_27920
Hypothetical protein.
  
 0.455
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.