STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_62610Putative oxidoreductase. (580 aa)    
Predicted Functional Partners:
ROP_45330
Cytochrome P450.
    
 0.909
ROP_47660
Cytochrome P450.
    
 0.909
ROP_47780
Cytochrome P450.
    
 0.909
ROP_42140
Putative oxidoreductase.
  
  
 
0.902
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
     
 0.850
ROP_58370
Putative peroxidase; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
     
 0.634
ROP_21340
Hypothetical protein.
     
 0.633
ROP_30550
Putative peroxidase.
     
 0.633
ROP_62600
IMP dehydrogenase family protein.
     
 0.632
ROP_41680
enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  
 0.602
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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