Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
ROP_10940 | ROP_43480 | Hypothetical protein. | Putative oxidoreductase. | 0.443 |
ROP_10940 | ROP_63490 | Hypothetical protein. | Hypothetical protein. | 0.459 |
ROP_43480 | ROP_10940 | Putative oxidoreductase. | Hypothetical protein. | 0.443 |
ROP_43480 | ROP_63490 | Putative oxidoreductase. | Hypothetical protein. | 0.459 |
ROP_47010 | ROP_63490 | Putative oxidoreductase; Belongs to the globin family. | Hypothetical protein. | 0.420 |
ROP_55840 | ROP_63490 | Putative oxidoreductase; Belongs to the globin family. | Hypothetical protein. | 0.420 |
ROP_55850 | ROP_55860 | Putative oxidoreductase. | Putative oxidoreductase; Belongs to the globin family. | 0.695 |
ROP_55850 | ROP_63490 | Putative oxidoreductase. | Hypothetical protein. | 0.420 |
ROP_55860 | ROP_55850 | Putative oxidoreductase; Belongs to the globin family. | Putative oxidoreductase. | 0.695 |
ROP_55860 | ROP_63490 | Putative oxidoreductase; Belongs to the globin family. | Hypothetical protein. | 0.420 |
ROP_63460 | ROP_63470 | Hypothetical protein. | SufE family protein. | 0.885 |
ROP_63460 | ROP_63480 | Hypothetical protein. | Putative thiosulfate sulfurtransferase; Protein synonym:rhodanese. | 0.879 |
ROP_63460 | ROP_63490 | Hypothetical protein. | Hypothetical protein. | 0.524 |
ROP_63470 | ROP_63460 | SufE family protein. | Hypothetical protein. | 0.885 |
ROP_63470 | ROP_63480 | SufE family protein. | Putative thiosulfate sulfurtransferase; Protein synonym:rhodanese. | 0.963 |
ROP_63470 | ROP_63490 | SufE family protein. | Hypothetical protein. | 0.586 |
ROP_63480 | ROP_63460 | Putative thiosulfate sulfurtransferase; Protein synonym:rhodanese. | Hypothetical protein. | 0.879 |
ROP_63480 | ROP_63470 | Putative thiosulfate sulfurtransferase; Protein synonym:rhodanese. | SufE family protein. | 0.963 |
ROP_63480 | ROP_63490 | Putative thiosulfate sulfurtransferase; Protein synonym:rhodanese. | Hypothetical protein. | 0.617 |
ROP_63490 | ROP_10940 | Hypothetical protein. | Hypothetical protein. | 0.459 |
page 1 of 2