STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fbiBCoenzyme F420--glutamate ligase. (454 aa)    
Predicted Functional Partners:
fbiA
LPPG--FO 2-phopspho-L-lactate transferase; Protein synonym:lactyl-2-diphospho-5'-guanosine--7, 8-didemethyl-8-hydroxy-5-deazariboflavin 2-phospho-L-lactate transferase.
 
 
 0.999
fbiD
Hypothetical protein; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.
 
   
 0.950
ROP_63720
Hypothetical protein.
     0.947
fdg
F420-dependent glucose-6-phosphate dehydrogenase; Catalyzes the coenzyme F420-dependent oxidation of glucose 6- phosphate (G6P) to 6-phosphogluconolactone.
 
  
 0.915
fbiC
Protein synonym:FO synthase.
 
   
 0.815
ROP_01680
Hypothetical protein.
 
  
 0.814
ROP_47760
Hypothetical protein.
 
   
 0.805
ROP_19710
Putative oxidoreductase.
 
  
 0.789
ROP_01490
Hypothetical protein.
 
   
 0.781
ROP_38980
Putative oxidoreductase.
 
  
 0.776
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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