ROP_64980 protein (Rhodococcus opacus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ROP_64980

Putative iron-siderophore binding protein. (334 aa)

Predicted Functional Partners:

ROP_70350

0.907

ROP_70370

0.885

ROP_64970

0.876

ROP_70360

0.795

ROP_30420

0.750

ROP_64960

0.749

ROP_62840

0.746

ROP_45140

0.738

ROP_09500

0.728

ROP_62830

0.691

Your Current Organism:

Rhodococcus opacus

NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ROP_09500	ROP_30420	Putative ABC transporter substrate-binding protein.	Putative ABC transporter ATP-binding protein.	0.717
ROP_09500	ROP_45140	Putative ABC transporter substrate-binding protein.	Putative ABC transporter ATP-binding protein.	0.704
ROP_09500	ROP_62830	Putative ABC transporter substrate-binding protein.	Putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.682
ROP_09500	ROP_62840	Putative ABC transporter substrate-binding protein.	Putative ABC transporter ATP-binding protein.	0.715
ROP_09500	ROP_64970	Putative ABC transporter substrate-binding protein.	Putative ABC transporter substrate-binding protein.	0.658
ROP_09500	ROP_64980	Putative ABC transporter substrate-binding protein.	Putative iron-siderophore binding protein.	0.728
ROP_09500	ROP_70350	Putative ABC transporter substrate-binding protein.	Putative iron-siderophore ABC transporter ATP-binding protein.	0.899
ROP_09500	ROP_70360	Putative ABC transporter substrate-binding protein.	Putative iron-siderophore ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.724
ROP_09500	ROP_70370	Putative ABC transporter substrate-binding protein.	Putative iron-siderophore ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.849
ROP_30420	ROP_09500	Putative ABC transporter ATP-binding protein.	Putative ABC transporter substrate-binding protein.	0.717
ROP_30420	ROP_62830	Putative ABC transporter ATP-binding protein.	Putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.926
ROP_30420	ROP_64970	Putative ABC transporter ATP-binding protein.	Putative ABC transporter substrate-binding protein.	0.717
ROP_30420	ROP_64980	Putative ABC transporter ATP-binding protein.	Putative iron-siderophore binding protein.	0.750
ROP_30420	ROP_70360	Putative ABC transporter ATP-binding protein.	Putative iron-siderophore ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.891
ROP_30420	ROP_70370	Putative ABC transporter ATP-binding protein.	Putative iron-siderophore ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.940
ROP_45140	ROP_09500	Putative ABC transporter ATP-binding protein.	Putative ABC transporter substrate-binding protein.	0.704
ROP_45140	ROP_62830	Putative ABC transporter ATP-binding protein.	Putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.926
ROP_45140	ROP_64970	Putative ABC transporter ATP-binding protein.	Putative ABC transporter substrate-binding protein.	0.703
ROP_45140	ROP_64980	Putative ABC transporter ATP-binding protein.	Putative iron-siderophore binding protein.	0.738
ROP_45140	ROP_70360	Putative ABC transporter ATP-binding protein.	Putative iron-siderophore ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.889