Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROP_34800 | ROP_65690 | ROP_34800 | ROP_65690 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Hypothetical protein. | 0.734 |
ROP_62910 | ROP_65690 | ROP_62910 | ROP_65690 | Putative RNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Hypothetical protein. | 0.610 |
ROP_65660 | ROP_65690 | ROP_65660 | ROP_65690 | Hypothetical protein. | Hypothetical protein. | 0.792 |
ROP_65660 | ROP_65710 | ROP_65660 | ROP_65710 | Hypothetical protein. | Hypothetical protein. | 0.614 |
ROP_65660 | coaD | ROP_65660 | ROP_65700 | Hypothetical protein. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.736 |
ROP_65660 | pyc-2 | ROP_65660 | ROP_65680 | Hypothetical protein. | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 0.538 |
ROP_65660 | recG | ROP_65660 | ROP_65670 | Hypothetical protein. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.958 |
ROP_65690 | ROP_34800 | ROP_65690 | ROP_34800 | Hypothetical protein. | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.734 |
ROP_65690 | ROP_62910 | ROP_65690 | ROP_62910 | Hypothetical protein. | Putative RNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | 0.610 |
ROP_65690 | ROP_65660 | ROP_65690 | ROP_65660 | Hypothetical protein. | Hypothetical protein. | 0.792 |
ROP_65690 | ROP_65710 | ROP_65690 | ROP_65710 | Hypothetical protein. | Hypothetical protein. | 0.671 |
ROP_65690 | coaD | ROP_65690 | ROP_65700 | Hypothetical protein. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.990 |
ROP_65690 | engA | ROP_65690 | ROP_06570 | Hypothetical protein. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.740 |
ROP_65690 | era | ROP_65690 | ROP_09600 | Hypothetical protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.588 |
ROP_65690 | ftsY | ROP_65690 | ROP_65810 | Hypothetical protein. | Signal recognition particle receptor; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.639 |
ROP_65690 | pyc-2 | ROP_65690 | ROP_65680 | Hypothetical protein. | Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. | 0.827 |
ROP_65690 | recG | ROP_65690 | ROP_65670 | Hypothetical protein. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.806 |
ROP_65710 | ROP_65660 | ROP_65710 | ROP_65660 | Hypothetical protein. | Hypothetical protein. | 0.614 |
ROP_65710 | ROP_65690 | ROP_65710 | ROP_65690 | Hypothetical protein. | Hypothetical protein. | 0.671 |
ROP_65710 | coaD | ROP_65710 | ROP_65700 | Hypothetical protein. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.754 |
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