STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_66540Putative MFS transporter. (503 aa)    
Predicted Functional Partners:
cysG
Siroheme synthase CysG; Multifunctional protein; protein synonym:precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase/uroporphyrin-III methyltransferase.
       0.889
cobB
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
       0.737
ROP_63520
Putative drug resistance efflux protein; Fragment.
  
     0.726
cobO
Protein synonym:ATP--co(I)rrinoid adenosyltransferase.
       0.703
ROP_66550
Hypothetical protein.
     
 0.646
ROP_66490
Putative magnesium chelatase subunit.
       0.635
ROP_66520
Hypothetical protein.
       0.623
fabF
Protein synonym:beta-ketoacyl-ACP synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
  
 0.541
fabF-2
Protein synonym:beta-ketoacyl-ACP synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
  
 0.541
ROP_66560
Hypothetical protein.
  
    0.503
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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