STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ideRIron-dependent regulator IdeR. (230 aa)    
Predicted Functional Partners:
ROP_67970
Putative acetate--CoA ligase; Protein synonym:acetyl-CoA synthetase (ADP-forming).
     
 0.836
galE
Protein synonym:UDP-galactose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
     
 0.832
ROP_67960
Putative acetoin utilization protein.
       0.825
ROP_09430
Putative Fur family transcriptional regulator; Belongs to the Fur family.
  
  
 0.781
hmuO
Putative heme oxygenase.
      
 0.726
hemA
Putative glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
  
  
 0.711
ROP_56870
S1C family peptidase.
  
    0.655
ROP_67430
Putative PspA family protein.
  
  
 0.649
ctaE
Cytochrome c oxidase subunit III.
     
 0.642
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
     
 0.614
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.