STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROP_71020Putative alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family. (365 aa)    
Predicted Functional Partners:
ROP_71010
Fatty acid-CoA racemase; Belongs to the CoA-transferase III family.
 
    
0.794
ROP_70990
Putative oxidoreductase.
   
 
 0.692
ROP_71000
Putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.676
ROP_71030
Hypothetical protein.
       0.647
ROP_30690
Hypothetical protein; Belongs to the CoA-transferase III family.
  
     0.523
ROP_71040
Putative acid--CoA ligase.
     
 0.523
fas1
Fatty-acid synthase I.
  
 0.446
ROP_71050
7Fe ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.439
ROP_71060
Putative acyl-CoA dehydrogenase.
  
 
 0.435
ROP_30700
Hypothetical protein.
 
 
 0.428
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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